1st BONBID-HIE Lesion Segmentation Challenge¶
Winners:¶
1st Place¶
civalab (University of Missouri)¶
Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho, K. Palaniappan¶
2nd Place¶
xleratorxlerator9 (Independent)¶
Authors: Dean Ninalga¶
3rd Place¶
frimpz (University of Missouri)¶
Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho, K. Palaniappan¶
3rd Place¶
schlauglab (University of Massachusetts Amherst)¶
Authors: Chiranjeewee Prasad Koirala, Sovesh Mohapatra, Gottfried Schlaug ¶
Workshop Schedule¶
The workshop will be held on 10/16/2023 (Monday) 10:00AM-1:00PM (EST)¶
Workshop Zoom Link¶
10:00 AM-10:15 AM Seetha Shankaran, MD Intro of HIE¶
Seetha Shankaran, M.D. neonatologist at the Children’s Hospital of Michigan was the principal investigator of the 1st randomized controlled trial of whole body cooling for neonatal hypoxic ischemic encephalopathy (HIE). Considered a pioneer in finding effective methods for protecting HIE-affected newborns, she led a landmark 2005 study in the New England Journal of Medicine to help make the 72-hour “cooling blanket” procedure the standard of care in treating this condition. Several of her subsequent papers in the New England Journal of Medicine and JAMA have further tested the optimization of cooling therapy in newborns and long term outcomes of cooled infants. She was also the first author in the publications which have validated a scoring system for MRI as a prognostic marker for neonatal encephalopathy.¶
10:15 AM-10:30 AM: Ellen Grant, MD Neuroradiologist's detection of HIE on neonatal brain MRI ¶
10:30 AM-11:00 AM: Rina Bao, PHD Introduction of HIE dataset and summary of challenge ¶
11:00 AM-12:30 PM: Presentations of participants' methods (for each team: 8 min presentation + 2 min Q&A)¶
11:00 AM -11:10 AM Team: civalab (University of Missouri)¶
Method: Fusion of Deep and Local Features Using Random Forests for Neonatal HIE Brain Imaging Analysis¶
Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho, K. Palaniappan¶
11:10 AM -11:20 AM¶
Team: xleratorxlertor9 (Independent)¶
Method: Label Aware Denoising Pretraining¶
Authors: Dean Ninalga¶
11:20 AM -11:30 AM¶
Team: schlauglab (University of Massachusetts Amherst)¶
Method: An Ensemble Approach to 3D Deep Learning for High-Resolution Diffusion MRI Segmentation in Neonatal Hypoxic-Ischemic Encephalopathy¶
Authors: Chiranjeewee Prasad Koirala, Sovesh Mohapatra, Gottfried Schlaug¶
11:30 AM -11:40 AM ¶
Team: IWM/Medgist (University of Applied Sciences Western Switzerland) Method: 3DCNN with Heavy Augmentation¶
Authors: Marek Wodzinski and Henning Müller¶
11:40 AM -11:50 AM¶
Team: UNeImage (University of Nebraska Medical Center)¶
Method: Voxel-specific Logistic Regression for Hypoxic Ischemic Encephalopathy Lesion Segmentation Authors: David G. Ellis and Michele R. Aizenberg¶
11:50 AM -12:00 PM¶
Team: arda.aydn (Istanbul Technical University)¶
Method: SegResNet based Reciprocal Transformation for BONBID-HIE Lesion Segmentation Authors: M.Arda Aydın, Elvin Abdinli, and Gozde Unal¶
12:00 AM -12:10 PM¶
Team: punithakumr/SVCC (University of Alberta)¶
Method: A Deep Neural Network Approach for Lesion Segmentation from Neonatal Brain Magnetic Resonance Imaging Authors: Nazanin Tahmasebi and Kumaradevan Punithakumar¶
12:10 PM -12:20 PM¶
Team: tiansong_philips (C&TS Philips)¶
Method: Brain Injury Segmentation Using SwinUNETR Authors: Tian Song and Yun Peng¶
12:30 PM-12:45 PM: Rina Bao, PHD Consensus of challenge participants' algorithms ¶
12:30 PM-1:00 PM: Yangming Ou, PHD Future work of HIE challenges¶