1st BONBID-HIE Lesion Segmentation Challenge


Winners:


1st Place 
civalab (University of Missouri)
Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho,  K. Palaniappan


2nd Place
xleratorxlerator9 (Independent)
Authors: Dean Ninalga

3rd Place
frimpz (University of Missouri)
Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho,  K. Palaniappan


3rd Place
schlauglab (University of Massachusetts Amherst)
Authors: Chiranjeewee Prasad Koirala, Sovesh Mohapatra, Gottfried Schlaug





Workshop Schedule

The workshop will be held on 10/16/2023 (Monday) 10:00AM-1:00PM (EST)
Workshop Zoom Link

10:00 AM-10:15 AM  Seetha Shankaran, MD  Intro of HIE
Seetha Shankaran, M.D. neonatologist at the Children’s Hospital of Michigan was the principal investigator of the 1st randomized controlled trial of whole body cooling for neonatal hypoxic ischemic encephalopathy (HIE). Considered a pioneer in finding effective methods for protecting HIE-affected newborns, she led a landmark 2005 study in the New England Journal of Medicine to help make the 72-hour “cooling blanket” procedure the standard of care in treating this condition. Several of her subsequent papers in the New England Journal of Medicine and JAMA have further tested the optimization of cooling therapy in newborns and long term outcomes of cooled infants. She was also the first author in the publications which have validated a scoring system for MRI as a prognostic marker for neonatal encephalopathy.


10:15 AM-10:30 AM: Ellen Grant, MD  Neuroradiologist's detection of HIE on neonatal brain MRI
10:30 AM-11:00 AM: Rina Bao, PHD Introduction of HIE dataset and summary of challenge
11:00 AM-12:30 PM: Presentations of participants' methods  (for each team: 8 min presentation + 2 min Q&A)
                     11:00 AM -11:10 AM
                      Team: civalab (University of Missouri)
                      Method: Fusion of Deep and Local Features Using Random Forests for Neonatal HIE Brain Imaging Analysis
                      Authors: Imad Eddine Toubal, Elham Soltani Kazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour Ahmed, Mai-Lan Ho,  K. Palaniappan
                     11:10 AM -11:20 AM
                      Team: xleratorxlertor9 (Independent)
                      Method: Label Aware Denoising Pretraining
                      Authors: Dean Ninalga
                     11:20 AM -11:30 AM
                      Team: schlauglab (University of Massachusetts Amherst)
                      Method: An Ensemble Approach to 3D Deep Learning for High-Resolution Diffusion MRI Segmentation in Neonatal Hypoxic-Ischemic Encephalopathy
                      Authors: Chiranjeewee Prasad Koirala, Sovesh Mohapatra, Gottfried Schlaug
                     11:30 AM -11:40 AM
                      Team: IWM/Medgist (University of Applied Sciences Western Switzerland)                       Method: 3DCNN with Heavy Augmentation
                      Authors: Marek Wodzinski and Henning Müller
                     11:40 AM -11:50 AM
                     Team: UNeImage (University of Nebraska Medical Center)
                     Method: Voxel-specific Logistic Regression for Hypoxic Ischemic Encephalopathy Lesion Segmentation
                     Authors: David G. Ellis and Michele R. Aizenberg
                     11:50 AM -12:00 PM 
                    Team: arda.aydn (Istanbul Technical University)
                     Method: SegResNet based Reciprocal Transformation for BONBID-HIE Lesion Segmentation
                     Authors: M.Arda Aydın, Elvin Abdinli, and Gozde Unal
                     12:00 AM -12:10 PM 
                    Team: punithakumr/SVCC (University of Alberta)
                     Method: A Deep Neural Network Approach for Lesion Segmentation from Neonatal Brain Magnetic Resonance Imaging
                     Authors: Nazanin Tahmasebi and Kumaradevan Punithakumar
                     12:10 PM -12:20 PM 
                    Team: tiansong_philips (C&TS Philips)
                     Method: Brain Injury Segmentation Using SwinUNETR
                     Authors: Tian Song and Yun Peng

12:30 PM-12:45 PM: Rina Bao, PHD Consensus of challenge participants' algorithms
12:30 PM-1:00 PM: Yangming Ou, PHD Future work of HIE challenges


Workshop Video

The 3-hour-long workshop will be recorded and uploaded to youtube and this workshop website.